I just released my source code for two Geneious plugins, InterProScan and Augustus, on Bitbucket. Right now I’m working on upgrading the InterProScan plugin to InterProScan version 5.  I should have a new version in a week or so.  The Augustus plugin is still in early stages of development but it runs, so if you need it or want to try it out, just let me know.  Eventually I’ll put a project page up here and link to downloads of the alpha versions.